Glyma10g04280 - SoyBase

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Report for Sequence Feature Glyma10g04280

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3247992
stop:	3250886
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44120	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr5:17756460-17758246 REVERSE LENGTH=472	SoyBase	E_val: 7.00E-54	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_Q9SB11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glycinin n=3 Tax=Glycine RepID=Q9SB11_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SB11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycinin n=3 Tax=Glycine RepID=Q9SB11_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g04280

Locus	Gene Symbol	Protein Name
	Gy4	Glycinin gene 4
	glycinin A5A4B3	glycinin A5A4B3 subunit

Expression Patterns of Glyma10g04280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04280

Paralog	Evidence	Comments
Glyma13g18450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g037100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g04280

Limit To All Plant Sequences

>Glyma10g04280.1   sequence type=CDS   gene model=Glyma10g04280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGCCCTTCACTCTCTCTCTTTCTTCCCTTTGCTTGCTACTCTTGTCGAGTGCATGCTTTGCTATTAGCTCCAGCAAGCTCAACGAGTGCCAACTCAACAACCTCAACGCGTTGGAACCCGACCACCGCGTTGAGTCCGAAGGTGGTTTGATTCAAACATGGAACTCTCAACACCCTGAGCTGAAATGCGCCGGTGTCACTGTTTCCAAACTCACCCTCAACCGCAATGGCCTCCACTTGCCATCTTACTCACCTTATCCCCGGATGATCATCATCGCCCAAGGGAAAGGAGCACTTGGAGTTGCAATTCCAGGATGTCCTGAGACGTTTGAGGAGCCACAAGAACAATCAAACAGAAGAGGCTCAAGGTCGCAGAAGCAGCAGCTACAGGACAGTCACCAGAAGATTCGTCACTTCAATGAAGGAGACGTACTCGTGATTCCTCCTGGTGTTCCTTACTGGACCTATAACACTGGCGATGAACCAGTTGTTGCCATCAGTCTTCTTGACACCTCTAACTTCAATAACCAGCTTGATCAAACCCCTAGGGTATTTTACCTTGCTGGGAACCCAGATATAGAGTACCCAGAGACCATGCAACAACAACAACAGCAGAAAAGTCATGGTGGACGCAAGCAGGGGCAACACCAGCAGGAGGAAGAGGAAGAAGGTGGCAGCGTGCTCAGTGGCTTCAGCAAACACTTCTTGGCACAATCCTTCAACACCAACGAGGACATAGCTGAGAAACTTCAGTCTCCAGACGACGAAAGGAAGCAGATCGTGACAGTGGAAGGAGGTCTCAGCGTTATCAGCCCCAAGTGGCAAGAACAACAAGATGAAGATGAAGATGAAGACGAAGATGATGAAGATGAACAAATTCCCTCTCACCCTCCTCGCCGACCAAGCCATGGAAAGCGTGAACAAGACGAGGACGAGGACGAAGATGAAGATAAACCTCGTCCTAGTCGACCAAGCCAAGGAAAGCGTGAACAAGACCAGGACCAGGACGAGGACGAAGATGAAGATGAAGATCAACCTCGCAAGAGCCGCGAATGGAGATCGAAAAAGACACAACCCAGAAGACCTAGACAAGAAGAACCACGTGAAAGAGGATGCGAGACAAGAAACGGGGTTGAGGAAAATATCTGCACCTTGAAGCTTCACGAGAACATTGCTCGCCCTTCACGCGCTGACTTCTACAACCCTAAAGCTGGTCGCATTAGTACCCTCAACAGCCTCACCCTCCCAGCCCTCCGCCAATTCCAACTCAGTGCCCAATATGTTGTCCTCTACAAGAATGGAATTTACTCTCCACATTGGAATCTGAATGCAAACAGTGTGATCTATGTGACTCGAGGACAAGGAAAGGTTAGAGTTGTGAACTGCCAAGGGAATGCAGTGTTCGACGGTGAGCTTAGGAGGGGACAATTGCTGGTGGTACCACAGAACTTCGTGGTGGCGGAGCAAGCCGGAGAACAAGGATTCGAATACATAGTATTCAAGACACACCACAACGCAGTCACTAGCTACTTGAAGGATGTGTTTAGGGCAATTCCCTCAGAGGTTCTTGCCCATTCTTACAACCTTCGACAGAGTCAAGTGTCTGAGCTTAAGTATGAAGGAAATTGGGGTCCTTTGGTCAACCCTGAGTCTCAACAAGGCTCACCCCGTGTTAAAGTCGCATAA

Predicted protein sequences of Glyma10g04280

Limit To All Plant Sequences

>Glyma10g04280.1   sequence type=predicted peptide   gene model=Glyma10g04280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPFTLSLSSLCLLLLSSACFAISSSKLNECQLNNLNALEPDHRVESEGGLIQTWNSQHPELKCAGVTVSKLTLNRNGLHLPSYSPYPRMIIIAQGKGALGVAIPGCPETFEEPQEQSNRRGSRSQKQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQTPRVFYLAGNPDIEYPETMQQQQQQKSHGGRKQGQHQQEEEEEGGSVLSGFSKHFLAQSFNTNEDIAEKLQSPDDERKQIVTVEGGLSVISPKWQEQQDEDEDEDEDDEDEQIPSHPPRRPSHGKREQDEDEDEDEDKPRPSRPSQGKREQDQDQDEDEDEDEDQPRKSREWRSKKTQPRRPRQEEPRERGCETRNGVEENICTLKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFQLSAQYVVLYKNGIYSPHWNLNANSVIYVTRGQGKVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQAGEQGFEYIVFKTHHNAVTSYLKDVFRAIPSEVLAHSYNLRQSQVSELKYEGNWGPLVNPESQQGSPRVKVA*

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